
Introduction
Create, edit, and manage workflows in your workbench.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchAssemble Sanger sequences into contigs to find - and resolve - conflicts between reads.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchLearn about the different BLAST searches and options available in the workbench.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchThis tutorial will show you how to link variants to positions on a 3D protein structure, and how to interpret the resulting interactive 3D model. The focus will be on identifying variants associated with drug resistance to chronic myeloid leukemia treatment.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchLearn how to reconstruct a phylogeny and visualize metadata on the tree.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchUse the tools and functionalities of the workbench to simplify your cloning strategy and visualize every steps of the process: Look for restriction enzymes, design primers, and simulate your cloning strategy and results.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchA guide to the most fundamental functionalities of your workbench: Learn how to import data in the workbench, how to run a tool and use the toolbar and side panels settings to visualize your results in different ways. Japanese version
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchFacilitate your Gateway cloning work with the Vector NTI Import plugin.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchRequired plugin: Vector NTI Import (non-commercial)
Learn how to predict the secondary structure of an RNA molecule.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchNext generation sequencing
Find methylated cytosines and identify regions with high methylation levels in your sequencing reads.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial takes you through a complete ChIP sequencing workflow using CLC Genomics Workbench.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchFind and annotate cancer specific variants by comparing normal and cancer tissue reads and by filtering for variants leading to amino acid changes.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchLearn how to create a reference genome and manage track lists to visualize your data and associated annotations.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchUnderstand the parameters of the Map Reads to Reference tool, and the impact of using paired end data on the mapping results.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchLearn how to identify species-specific variants, filter those leading to amino acid changes, and associate relevant species-specific pathways.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchLearn how to manually join or split contigs using the Align Contigs tool of Genome Finishing Module.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: CLC Genomics Finishing Module (commercial)
This tutorial highlights some of the tools for a typical de novo sequencing workflow with a data set from a high-throughput sequencing machine.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchAn introduction to how to import fastq paired data, run a sequence quality report, trim the data, and run a de novo assembly with scaffolding.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchUsing the Transcript Discovery plugin, quickly annotate de novo the Fragaria vesca genome using both long and short reads.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchPlugin required: Transcript Discovery plugin (non-commercial)
Expression analysis
This tutorial goes through the initial parts of analyzing a small RNA data set: Trim off adapter sequences, extract, count, and annotate small RNAs to identify known miRNAs and other non-coding RNAs.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial gives a brief overview of how to analyze RNA-seq data with a subset of publicly available RNA-seq data.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Ingenuity Pathway Analysis plugin (non-commercial). An active IPA account is required.
Perform data quality control, identify differentially expressed genes, and interpret your results in a biological context using annotations. This tutorial is based on microarray data but many tools are applicable to RNA-seq.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Main WorkbenchDiscover the powerful statistical analysis tools in CLC Genomics Workbench.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial demonstrates the collaborative power of RNA-Seq Analysis and Ingenuity Pathway Analysis plugin to analyze and interpret RNA-seq expression data.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugins: Advanced RNA-Seq (non-commercial), Ingenuity Pathway Analysis plugin (non-commercial). Use of the IPA plugin requires an active IPA account.
Biomedical research
This tutorial will demonstrate how workflows that have more than one input can be run in batch mode. This is the case for most of the ready-to-use workflows available in the toolbox of Biomedical Genomics Analysis plugin, such as all workflows that analyze a trio or a family of four, as well as workflows that compare tumor to normal samples.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
This tutorial will guide you through the process of identifying variants and verifying them using Biomedical Genomics Analysis plugin.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
This tutorial will guide you through the process of identifying somatic variants from a matched tumor/normal sample pair from one patient using the Biomedical Genomics Analysis plugin.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
This tutorial uses the capacities of Biomedical Genomics Analysis plugin to find very low frequency variants in targeted amplicon sequences generated using a QIAGEN GeneRead DNAseq Targeted Panels V2 kit.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
Copy number variants are amplifications and deletions of exon and chromosome fragments as well as whole exons or chromosomes. The copy number variant detection algorithm is designed to detect copy number variations (CNVs) from targeted resequencing experiments. These can be either gene panels or whole exome sequencing. It identifies CNV regions where the normalized coverage of the sample to be analyzed differs from the control samples in a statistically significant way.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial uses the capacities of the Biomedical Genomics Analysis plugin to find actionable variants - even at very low frequencies - in Targeted Amplicons sequences generated using a BRCA1 and BRCA2 QIAseq panel kit.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
Ready-to-use workflows are provided in Biomedical Genomics Analysis plugin for different applications and scenarios. However, there may be situations where you would like to extend an analysis or customize it to special needs. In this tutorial we modify the Identify Somatic Variants from Tumor Normal Pair (WES) ready-to-use workflow to include the step in which we remove variants present in HapMap.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
This tutorial uses the capacities of the Biomedical Genomics Analysis plugin to detect fusion events in sequences generated using a QIAseq Targeted RNAscan Panel.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchRequired plugin: Biomedical Genomics Analysis plugin (non-commercial).
Compare differential expression of miRNA between Adrenal Myelolipoma (benign neoplasm) and Adrenocortical Carcinoma to identify miRNA that can be used for diagnostic.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial uses the capabilities of CLC Genomics Workbench with the Biomedical Genomics Analysis plugin to calculate reliable and consistent TMB score and MSI status values from reads sequenced with the QIAseq Tumor Burden Mutation panel assay (DHS-8800Z).
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial uses the capacities of the Biomedical Genomics Analysis plugin to detect fusion events and find actionable variants in reads generated using a custom QIAseq Multimodal panel.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchMicrobial genomics
Assemble metagenomes derived from two different groups of samples and investigate their functional differences.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModuleRequired plugins: CLC Microbial Genomics Module (commercial), MetaGeneMark (commercial)
This tutorial will take you through the tools available in CLC Microbial Genomics Module to perform typing and epidemiological study of cultured bacteria using the metadata functionalities of the Microbial Genomics module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModuleRequired plugin: CLC Microbial Genomics Module (commercial)
This tutorial will take you through the different tools available in CLC Microbial Genomics Module and CLC Genomics Workbench to perform OTU clustering and estimate alpha and beta diversities of microbial communities with the Microbial Genomics module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModulePlugin required: CLC Microbial Genomics Module (commercial)
Learn how to identify individual constituents of a microbial community, and how to identify microbiome profiles that can be associated with certain sample parameters (metadata). In this example we solve a forensics case where the microbiome of the soil on a suspects boots can be associated with the soil microbiome at a crime scene.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModuleRequired plugin: CLC Microbial Genomics Module (commercial)
Learn how easy it is to monitor the evolution of a microbiota over time using the taxonomic profiling tools from CLC Microbial Genomics Module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModulePlugin required: CLC Microbial Genomics Module (commercial)
Learn how CLC Genomics Module can analyze metagenomics samples with respect to the presence and abundance of antimicrobial resistance (AMR) with the Drug Resistance Analysis tools and accompanying databases, in particular the integrated up- to-date QIAGEN Microbial Insight - Antimicrobial Resistance database (QMI-AR).
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics ModuleLearn how to use the Create Annotated Sequence List tool to annotate sequence lists to create your own microbial reference data for use in various downstream analyses.
Available as a PDF tutorial
QIAGEN CLC Microbial Genomics Module